The 2.0 version of rSNPBase

Variant report

Variant rs10066296
Chromosome Location chr5:80589709-80589710
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80572000-80595200 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr5:80578800-80595200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:80581600-80595800 Weak transcription Small Intestine intestine
4 chr5:80584200-80595000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr5:80584400-80595000 Weak transcription NH-A brain
6 chr5:80586400-80595000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:80586400-80595000 Weak transcription Hela-S3 cervix
8 chr5:80586800-80595200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr5:80587000-80595000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr5:80587000-80595000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr5:80587400-80590200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr5:80587600-80589800 ZNF genes & repeats Primary B cells from peripheral blood blood
13 chr5:80587600-80591400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr5:80588000-80595000 Weak transcription Osteobl bone
15 chr5:80588000-80595200 Weak transcription A549 lung
16 chr5:80588200-80594600 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr5:80588200-80594600 Weak transcription Ovary ovary
18 chr5:80588200-80595000 Weak transcription NHLF lung
19 chr5:80588200-80595200 Weak transcription Right Atrium heart
20 chr5:80588200-80596400 Weak transcription Right Ventricle heart
21 chr5:80588400-80593000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr5:80588400-80593800 Weak transcription HSMMtube muscle
23 chr5:80588400-80595000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr5:80588400-80595200 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr5:80588400-80595200 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr5:80588400-80595200 Weak transcription Rectal Smooth Muscle rectum
27 chr5:80588400-80595200 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr5:80588400-80595800 Weak transcription Left Ventricle heart
29 chr5:80588400-80596400 Weak transcription Psoas Muscle Psoas
30 chr5:80588600-80593200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:80588600-80593200 Weak transcription Liver Liver
32 chr5:80588600-80596200 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr5:80588800-80590600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr5:80588800-80590800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr5:80589000-80591000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:80589200-80593200 Weak transcription Fetal Heart heart
37 chr5:80589400-80595200 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr5:80589600-80590400 Weak transcription Fetal Lung lung
39 chr5:80589600-80590800 Weak transcription Fetal Kidney kidney
40 chr5:80589600-80595000 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr5:80589600-80595000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr5:80589600-80595000 Weak transcription Brain Substantia Nigra brain
43 chr5:80589600-80595200 Weak transcription Brain Hippocampus Middle brain
44 chr5:80589600-80595800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015