Variant report

Variant	rs10055110
Chromosome Location	chr5:17232130-17232131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:17231132..17233023-chr5:17300531..17302683,2	MCF-7	breast:
2	chr5:17217945..17220809-chr5:17231815..17233949,2	MCF-7	breast:
3	chr5:17228011..17230721-chr5:17231022..17233050,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10068662	0.82[YRI][hapmap];0.95[AFR][1000 genomes]
rs10075060	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17219800-17233600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:17222800-17239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:17223200-17235800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:17224400-17233400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:17225600-17232600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:17225600-17241600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:17225800-17232400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:17227800-17232800	Weak transcription	Gastric	stomach
9	chr5:17227800-17233400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:17227800-17234400	Enhancers	Fetal Brain Male	brain
11	chr5:17228200-17232600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:17228800-17237400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:17229000-17258000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:17229400-17232800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:17229400-17233800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:17229400-17238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:17229400-17241200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:17229400-17243800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:17229600-17232400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:17229600-17232400	Genic enhancers	A549	lung
21	chr5:17229600-17235000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:17229600-17241600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:17229800-17232400	Genic enhancers	Fetal Brain Female	brain
24	chr5:17229800-17232600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:17229800-17232600	Strong transcription	Osteobl	bone
26	chr5:17229800-17233000	Weak transcription	Spleen	Spleen
27	chr5:17229800-17233200	Strong transcription	NH-A	brain
28	chr5:17229800-17233400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:17229800-17233400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:17229800-17233800	Strong transcription	NHEK	skin
31	chr5:17229800-17235800	Weak transcription	HUVEC	blood vessel
32	chr5:17229800-17236000	Weak transcription	Aorta	Aorta
33	chr5:17229800-17238000	Weak transcription	HMEC	breast
34	chr5:17229800-17240000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:17229800-17241200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:17229800-17241200	Weak transcription	Ovary	ovary
37	chr5:17229800-17241600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:17229800-17241800	Weak transcription	Brain Angular Gyrus	brain
39	chr5:17229800-17261600	Weak transcription	Fetal Stomach	stomach
40	chr5:17230000-17232800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:17230000-17241600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:17230200-17233000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:17230400-17233400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:17230400-17233400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:17230600-17232800	Strong transcription	Placenta	Placenta
46	chr5:17230800-17232800	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr5:17231000-17232400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr5:17231000-17232800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:17231000-17232800	Strong transcription	GM12878-XiMat	blood
50	chr5:17231200-17233200	Strong transcription	Primary B cells from cord blood	blood

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