Variant report

Variant	rs10075060
Chromosome Location	chr5:17251893-17251894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:17251354..17254126-chr5:17258687..17261366,3	MCF-7	breast:
2	chr5:17248445..17250373-chr5:17251254..17254017,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10055110	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068662	0.82[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17229000-17258000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:17229800-17261600	Weak transcription	Fetal Stomach	stomach
3	chr5:17232000-17259200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:17232400-17254400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:17232800-17255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:17232800-17260000	Weak transcription	Fetal Kidney	kidney
7	chr5:17232800-17278800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:17233000-17255600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:17242000-17257600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:17242200-17253800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:17242200-17255600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:17242400-17254400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:17242400-17255600	Weak transcription	Fetal Lung	lung
14	chr5:17242600-17253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:17242800-17258000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:17242800-17275000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:17244600-17253800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:17244800-17274600	Weak transcription	Ovary	ovary
19	chr5:17247400-17252000	Enhancers	HUVEC	blood vessel
20	chr5:17248000-17258000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:17248200-17257800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:17249200-17254400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:17249400-17252000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:17249400-17252000	Weak transcription	HSMMtube	muscle
25	chr5:17249400-17255200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:17249400-17257800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:17249400-17275200	Weak transcription	Aorta	Aorta
28	chr5:17250200-17252000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:17250200-17252000	Weak transcription	Placenta	Placenta
30	chr5:17250400-17252000	Weak transcription	HSMM	muscle
31	chr5:17251000-17252000	Genic enhancers	Hela-S3	cervix
32	chr5:17251200-17253000	Enhancers	NHEK	skin
33	chr5:17251200-17253800	Enhancers	NHDF-Ad	bronchial
34	chr5:17251400-17252000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:17251400-17252200	Strong transcription	GM12878-XiMat	blood
36	chr5:17251400-17252800	Genic enhancers	NHLF	lung
37	chr5:17251400-17255800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:17251600-17252000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:17251600-17252000	Genic enhancers	Muscle Satellite Cultured Cells	--
40	chr5:17251600-17252000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:17251600-17252000	Strong transcription	Brain Germinal Matrix	brain
42	chr5:17251600-17252200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:17251600-17252200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:17251600-17252200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:17251600-17252200	Enhancers	Fetal Brain Male	brain
46	chr5:17251600-17252200	Genic enhancers	Fetal Brain Female	brain
47	chr5:17251600-17252200	Genic enhancers	NH-A	brain
48	chr5:17251600-17252400	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr5:17251600-17252800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:17251600-17252800	Enhancers	Primary hematopoietic stem cells	blood

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