Variant report

Variant	rs10055898
Chromosome Location	chr5:46363515-46363516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57915525..57918399-chr5:46361638..46364174,2	MCF-7	breast:

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10035288	0.85[AMR][1000 genomes]
rs10035927	0.83[AMR][1000 genomes]
rs10037109	0.90[AMR][1000 genomes]
rs10044454	0.81[AMR][1000 genomes]
rs10053628	0.89[AFR][1000 genomes]
rs10053694	0.88[AMR][1000 genomes]
rs10054179	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10058065	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10059207	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10059495	0.84[AMR][1000 genomes]
rs10060528	0.84[AMR][1000 genomes]
rs10061916	0.91[AMR][1000 genomes]
rs10063520	0.84[AMR][1000 genomes]
rs10065314	0.81[AMR][1000 genomes]
rs10071996	0.81[AFR][1000 genomes]
rs10073687	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10076113	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10213721	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10214118	0.87[AFR][1000 genomes]
rs10214255	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10214256	0.86[AMR][1000 genomes]
rs10462113	0.85[AFR][1000 genomes]
rs10462115	0.83[AFR][1000 genomes]
rs10472415	0.81[AMR][1000 genomes]
rs10941789	0.86[AMR][1000 genomes]
rs10941797	0.81[AMR][1000 genomes]
rs10941801	0.87[AMR][1000 genomes]
rs10941803	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10941823	0.84[AFR][1000 genomes]
rs11745763	0.84[AMR][1000 genomes]
rs11748472	0.86[AFR][1000 genomes]
rs11750244	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11750263	0.85[AMR][1000 genomes]
rs11949371	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12513534	0.90[AMR][1000 genomes]
rs12513540	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12514163	0.84[AMR][1000 genomes]
rs12516885	0.82[AMR][1000 genomes]
rs12518698	0.85[AFR][1000 genomes]
rs12522625	0.82[AFR][1000 genomes]
rs12523279	0.84[AMR][1000 genomes]
rs12656991	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12657568	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12657760	0.81[AMR][1000 genomes]
rs12657764	0.81[AMR][1000 genomes]
rs12697557	0.84[AMR][1000 genomes]
rs13154405	0.82[AMR][1000 genomes]
rs13157277	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13161439	0.81[AMR][1000 genomes]
rs13168483	0.81[AMR][1000 genomes]
rs13187523	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13187720	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13354339	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13358908	0.89[AFR][1000 genomes]
rs28816502	0.87[AFR][1000 genomes]
rs28823684	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28847123	0.88[AFR][1000 genomes]
rs28855077	0.90[AFR][1000 genomes]
rs34101830	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34647604	0.82[AFR][1000 genomes]
rs34693648	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35503553	0.84[AMR][1000 genomes]
rs36019653	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs36031455	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4975899	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4975901	0.81[AFR][1000 genomes]
rs4975904	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4975913	0.86[AMR][1000 genomes]
rs4975919	0.87[AMR][1000 genomes]
rs4975920	0.87[AMR][1000 genomes]
rs4975924	0.87[AMR][1000 genomes]
rs4975926	0.85[AMR][1000 genomes]
rs4975927	0.83[AFR][1000 genomes]
rs4975938	0.84[AFR][1000 genomes]
rs4975940	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4975941	0.90[AMR][1000 genomes]
rs4975942	0.90[AFR][1000 genomes]
rs4975943	0.85[AFR][1000 genomes]
rs4975944	0.83[AFR][1000 genomes]
rs4975960	0.81[AMR][1000 genomes]
rs4975964	0.81[AMR][1000 genomes]
rs4975967	0.81[AMR][1000 genomes]
rs4975968	0.84[AMR][1000 genomes]
rs4975969	0.84[AMR][1000 genomes]
rs4975970	0.84[AMR][1000 genomes]
rs4975971	0.84[AMR][1000 genomes]
rs4975974	0.84[AMR][1000 genomes]
rs4975975	0.84[AMR][1000 genomes]
rs4975976	0.84[AMR][1000 genomes]
rs4975978	0.83[AMR][1000 genomes]
rs4975979	0.86[AMR][1000 genomes]
rs4975991	0.81[AMR][1000 genomes]
rs55638678	0.93[AMR][1000 genomes]
rs7293345	0.90[AMR][1000 genomes]
rs7293371	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7293440	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7293442	0.89[AFR][1000 genomes]
rs7293446	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8175389	0.82[AMR][1000 genomes]
rs8175427	0.82[AMR][1000 genomes]
rs8185006	0.84[AMR][1000 genomes]
rs8185011	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8185088	0.84[AFR][1000 genomes]
rs8185095	0.86[AMR][1000 genomes]
rs8185180	0.84[AMR][1000 genomes]
rs8185192	0.84[AMR][1000 genomes]
rs8185225	0.82[AMR][1000 genomes]
rs8185253	0.84[AMR][1000 genomes]
rs8185288	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8185292	0.86[AMR][1000 genomes]
rs8185303	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8185312	0.84[AMR][1000 genomes]
rs8185316	0.92[AMR][1000 genomes]
rs8185329	0.86[AFR][1000 genomes]
rs8185338	0.81[AMR][1000 genomes]
rs8185354	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8185356	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8185361	0.84[AMR][1000 genomes]
rs8188068	0.84[AMR][1000 genomes]
rs8188158	0.84[AMR][1000 genomes]
rs8188221	0.85[AMR][1000 genomes]
rs8188228	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8188256	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9687218	0.84[AMR][1000 genomes]
rs9716588	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027084	chr5:45675353-46389261	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024533	chr5:45840303-46389261	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1035033	chr5:45898541-46389261	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1020758	chr5:45899779-46389261	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024568	chr5:45905997-46389261	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1028073	chr5:45906782-46389261	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023025	chr5:45916036-46389261	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034474	chr5:45921127-46389261	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1017281	chr5:45922311-46389261	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1025907	chr5:45931038-46389261	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1027296	chr5:45939287-46389261	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1023770	chr5:45953688-46389261	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1025880	chr5:46000763-46389261	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1017988	chr5:46035145-46389261	Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1034670	chr5:46101845-46389261	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1028712	chr5:46106823-46389261	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1019374	chr5:46115828-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1018733	chr5:46136820-46389261	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1028954	chr5:46151819-46389261	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1029174	chr5:46152428-46389261	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1027538	chr5:46161510-46389261	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1020350	chr5:46191236-46389261	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1028629	chr5:46195871-46389261	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv598016	chr5:46199395-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1016871	chr5:46199422-46389261	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1027475	chr5:46209287-46365429	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1028468	chr5:46209287-46382640	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1032169	chr5:46209287-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1017681	chr5:46209870-46389261	ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv1020727	chr5:46224012-46365429	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv1034011	chr5:46224012-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv1029514	chr5:46246501-46389261	ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv1016164	chr5:46251306-46365429	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv1019933	chr5:46251306-46389261	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv1024503	chr5:46270996-46365429	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv1032372	chr5:46270996-46389261	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv598083	chr5:46276787-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv1021211	chr5:46278212-46389261	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv1031446	chr5:46313335-46389261	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv3431831	chr5:46318595-46372693	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv1029954	chr5:46326176-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv3375421	chr5:46341495-46372493	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv3386333	chr5:46342195-46372493	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv3429243	chr5:46342195-46372493	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46343200-46371200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:46343400-46370200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr5:46344200-46371400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr5:46351600-46368400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr5:46355200-46367800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr5:46356200-46365000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr5:46359200-46364800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr5:46359400-46369800	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr5:46359800-46364200	Weak transcription	HSMMtube	muscle
10	chr5:46360000-46363600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:46361200-46365200	Weak transcription	NH-A	brain
12	chr5:46363000-46364200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:46363400-46364400	ZNF genes & repeats	Left Ventricle	heart

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