Variant report

Variant	rs13154405
Chromosome Location	chr5:46403633-46403634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10035288	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10035927	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10044454	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10054179	0.80[EUR][1000 genomes]
rs10055898	0.82[AMR][1000 genomes]
rs10058065	0.83[EUR][1000 genomes]
rs10060408	0.81[EUR][1000 genomes]
rs10062139	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10065204	0.83[EUR][1000 genomes]
rs10071996	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10076113	0.82[EUR][1000 genomes]
rs10080117	0.80[AMR][1000 genomes]
rs10213721	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10214118	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10214255	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10214256	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10941803	0.84[EUR][1000 genomes]
rs10941822	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10941823	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10941827	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11744550	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11750244	0.84[EUR][1000 genomes]
rs12513512	0.85[AMR][1000 genomes]
rs12513540	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12521357	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12522625	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12657568	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13157277	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13178754	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13187523	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13187720	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13354339	0.82[EUR][1000 genomes]
rs36031455	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4975899	0.84[EUR][1000 genomes]
rs4975904	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4975925	0.83[EUR][1000 genomes]
rs4975926	0.81[EUR][1000 genomes]
rs4975940	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4975941	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4975942	0.82[ASN][1000 genomes]
rs55638678	0.81[EUR][1000 genomes]
rs7293325	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7293371	0.82[EUR][1000 genomes]
rs7293440	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7293442	0.81[ASN][1000 genomes]
rs7293446	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7293471	0.83[EUR][1000 genomes]
rs8175436	0.94[ASN][1000 genomes]
rs8185006	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8185088	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8185247	0.88[ASN][1000 genomes]
rs8185288	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8185303	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8185316	0.80[EUR][1000 genomes]
rs8185329	0.80[EUR][1000 genomes]
rs8185354	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8185356	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8188228	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8188256	0.86[EUR][1000 genomes]
rs8188260	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:46403000-46404400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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