Variant report

Variant	rs7293471
Chromosome Location	chr5:46404548-46404549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10035288	0.83[EUR][1000 genomes]
rs10035927	0.83[EUR][1000 genomes]
rs10073477	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10941822	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12655159	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12656982	0.86[AMR][1000 genomes]
rs13154405	0.83[EUR][1000 genomes]
rs13187720	0.80[EUR][1000 genomes]
rs4975918	0.81[AMR][1000 genomes]
rs7293384	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8175436	0.88[AFR][1000 genomes]
rs8185006	0.82[EUR][1000 genomes]
rs8185325	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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