Variant report

Variant	rs10062139
Chromosome Location	chr5:46396439-46396440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10035288	0.83[ASN][1000 genomes]
rs10035927	0.84[ASN][1000 genomes]
rs10053628	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10054179	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10058065	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10064160	0.85[AFR][1000 genomes]
rs10065204	0.83[ASN][1000 genomes]
rs10071996	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10076113	0.81[ASN][1000 genomes]
rs10080117	0.81[ASN][1000 genomes]
rs10213721	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10214016	0.81[ASN][1000 genomes]
rs10214118	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10214255	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10214256	0.94[ASN][1000 genomes]
rs10462113	0.85[ASN][1000 genomes]
rs10941803	0.81[ASN][1000 genomes]
rs10941822	0.93[ASN][1000 genomes]
rs10941823	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11748472	0.83[AFR][1000 genomes]
rs11750244	0.80[ASN][1000 genomes]
rs12513540	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12518698	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12522625	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12657568	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13154405	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13157277	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13187523	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13187720	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13358908	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28816502	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28847123	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28855077	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36031455	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4975899	0.83[ASN][1000 genomes]
rs4975904	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4975914	0.80[ASN][1000 genomes]
rs4975940	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4975941	0.94[ASN][1000 genomes]
rs4975942	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4975943	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4975944	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4975950	0.81[AFR][1000 genomes]
rs7293325	0.86[ASN][1000 genomes]
rs7293371	0.81[ASN][1000 genomes]
rs7293440	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7293442	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7293446	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8175436	0.89[ASN][1000 genomes]
rs8185006	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8185088	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8185220	0.83[ASN][1000 genomes]
rs8185247	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8185248	0.91[AFR][1000 genomes]
rs8185288	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8185303	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8185329	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8185354	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs8185356	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8188228	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8188256	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8188260	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598016	chr5:46199395-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598083	chr5:46276787-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391000-46397800	Weak transcription	NHLF	lung
2	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr5:46391800-46397400	Weak transcription	NH-A	brain
6	chr5:46396200-46399600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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