Variant report

Variant	rs10064160
Chromosome Location	chr5:46397102-46397103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10043876	0.82[AMR][1000 genomes]
rs10062139	0.85[AFR][1000 genomes]
rs10071996	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10941823	0.81[AFR][1000 genomes]
rs13187523	0.81[AFR][1000 genomes]
rs13187720	0.81[AFR][1000 genomes]
rs4975954	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8185247	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8185248	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8185303	0.80[AFR][1000 genomes]
rs8185354	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598016	chr5:46199395-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598083	chr5:46276787-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391000-46397800	Weak transcription	NHLF	lung
2	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr5:46391800-46397400	Weak transcription	NH-A	brain
6	chr5:46396200-46399600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr5:46396800-46397800	Weak transcription	NHEK	skin
8	chr5:46397000-46398400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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