Variant report

Variant	rs4975950
Chromosome Location	chr5:74429862-74429863
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035839	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10053628	0.81[AFR][1000 genomes]
rs10054540	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10062139	0.81[AFR][1000 genomes]
rs10065204	0.87[ASN][1000 genomes]
rs10075077	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10080117	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10213721	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10214016	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10214118	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10214255	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10941823	0.85[AFR][1000 genomes]
rs12513540	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12518698	0.84[AFR][1000 genomes]
rs12521357	0.81[AFR][1000 genomes]
rs12522625	0.86[AFR][1000 genomes]
rs12657568	0.80[AFR][1000 genomes]
rs13187523	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13187720	0.86[AFR][1000 genomes]
rs28816502	0.84[AFR][1000 genomes]
rs36031455	0.84[ASN][1000 genomes]
rs4975904	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4975940	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4975941	0.80[AMR][1000 genomes]
rs4975942	0.82[AFR][1000 genomes]
rs4975943	0.86[AFR][1000 genomes]
rs4975944	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7293440	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7293442	0.83[AFR][1000 genomes]
rs7293446	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs8185088	0.87[AFR][1000 genomes]
rs8185220	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs8185303	0.86[AFR][1000 genomes]
rs8185354	0.86[AFR][1000 genomes]
rs8185356	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs8188228	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs8188256	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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