Variant report

Variant	rs10056158
Chromosome Location	chr5:167253369-167253370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10063203	1.00[EUR][1000 genomes]
rs13354770	1.00[EUR][1000 genomes]
rs13361271	1.00[EUR][1000 genomes]
rs13361323	1.00[EUR][1000 genomes]
rs13361359	1.00[EUR][1000 genomes]
rs13361383	1.00[EUR][1000 genomes]
rs28590401	1.00[EUR][1000 genomes]
rs58820246	1.00[EUR][1000 genomes]
rs59859592	1.00[EUR][1000 genomes]
rs60519985	1.00[EUR][1000 genomes]
rs73370917	1.00[EUR][1000 genomes]
rs73370924	1.00[EUR][1000 genomes]
rs7704178	1.00[EUR][1000 genomes]
rs7723890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
2	chr5:167248400-167255200	Weak transcription	Esophagus	oesophagus
3	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167250000-167253400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167250200-167253800	Weak transcription	HMEC	breast
6	chr5:167250600-167255200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167250600-167255800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167250800-167255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:167251000-167256600	Genic enhancers	NHEK	skin
10	chr5:167251400-167253800	Weak transcription	Brain Germinal Matrix	brain
11	chr5:167251400-167262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167251800-167257000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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