Variant report

Variant	rs13361323
Chromosome Location	chr5:167212572-167212573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10056158	1.00[EUR][1000 genomes]
rs10063203	1.00[EUR][1000 genomes]
rs13354770	1.00[EUR][1000 genomes]
rs13361271	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13361359	1.00[EUR][1000 genomes]
rs13361383	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590401	1.00[EUR][1000 genomes]
rs58820246	1.00[EUR][1000 genomes]
rs59859592	1.00[EUR][1000 genomes]
rs60519985	1.00[EUR][1000 genomes]
rs73370917	1.00[EUR][1000 genomes]
rs73370924	1.00[EUR][1000 genomes]
rs7704178	1.00[EUR][1000 genomes]
rs7723890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167209400-167214600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:167210400-167212800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167211000-167214600	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:167211400-167212600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:167211400-167212600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:167211400-167212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:167211400-167213800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:167211600-167212600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167211600-167212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:167211600-167212800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:167211600-167212800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:167211800-167214600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:167212200-167212600	Enhancers	HSMM	muscle
18	chr5:167212200-167213200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr5:167212400-167212800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:167212400-167214800	Enhancers	Osteobl	bone

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