Variant report

Variant	rs10056629
Chromosome Location	chr5:107315188-107315189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10061295	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479419	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413648	1.00[AMR][1000 genomes]
rs28413837	1.00[AMR][1000 genomes]
rs28514323	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521084	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
4	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
5	chr5:107312400-107315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:107313400-107316200	Enhancers	Dnd41	blood
8	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:107313600-107316200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:107313800-107315200	Weak transcription	Gastric	stomach
11	chr5:107313800-107315400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:107313800-107316800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
14	chr5:107313800-107321000	Weak transcription	Lung	lung
15	chr5:107314000-107315400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:107314000-107316600	Weak transcription	Fetal Kidney	kidney
17	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:107314600-107315200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:107314600-107315400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:107315000-107315200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:107315000-107315400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:107315000-107315400	Enhancers	Brain Anterior Caudate	brain
24	chr5:107315000-107315600	Enhancers	Muscle Satellite Cultured Cells	--

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