Variant report

Variant	rs28413837
Chromosome Location	chr5:107168737-107168738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10056629	1.00[AMR][1000 genomes]
rs10061295	1.00[AMR][1000 genomes]
rs10477883	1.00[AMR][1000 genomes]
rs10479419	1.00[AMR][1000 genomes]
rs28413648	1.00[AMR][1000 genomes]
rs28514323	1.00[AMR][1000 genomes]
rs28521084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107166800-107170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:107168000-107169000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:107168000-107180200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:107168400-107176200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:107168600-107169600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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