Variant report

Variant	rs10057444
Chromosome Location	chr5:107135430-107135431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10037033	0.95[ASN][1000 genomes]
rs10045237	0.95[ASN][1000 genomes]
rs11242650	0.85[ASN][1000 genomes]
rs12516234	0.95[ASN][1000 genomes]
rs12518562	0.95[ASN][1000 genomes]
rs12522401	0.83[ASN][1000 genomes]
rs1862310	0.84[ASN][1000 genomes]
rs1974789	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28539291	0.96[ASN][1000 genomes]
rs6869199	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6875281	0.95[ASN][1000 genomes]
rs6875450	0.95[ASN][1000 genomes]
rs6876584	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv969928	chr5:107132237-107143800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107130800-107140400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107134800-107136000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:107135000-107135600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107135000-107135600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:107135000-107135800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:107135000-107135800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:107135000-107135800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:107135000-107135800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:107135000-107136000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107135000-107136200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:107135000-107136400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:107135200-107135600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:107135200-107135600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:107135200-107136000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:107135200-107136000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:107135400-107135800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:107135400-107135800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:107135400-107136600	Enhancers	Fetal Lung	lung
19	chr5:107135400-107137000	Enhancers	Primary T cells from cord blood	blood
20	chr5:107135400-107137800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:107135400-107138400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:107135400-107140600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:107135400-107143000	Weak transcription	Right Atrium	heart

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