Variant report

Variant	rs28539291
Chromosome Location	chr5:107137271-107137272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10037033	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10045237	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10057444	0.96[ASN][1000 genomes]
rs11242650	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12516234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12518562	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12522401	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1862310	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1974789	0.90[ASN][1000 genomes]
rs6869199	0.94[ASN][1000 genomes]
rs6875281	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6875450	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6876584	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs930219	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv969928	chr5:107132237-107143800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107130800-107140400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107135400-107137800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:107135400-107138400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107135400-107140600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107135400-107143000	Weak transcription	Right Atrium	heart
6	chr5:107135600-107140800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:107135600-107140800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107135800-107140400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:107135800-107140600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:107135800-107140800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:107135800-107140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:107135800-107141400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:107136000-107140400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:107136000-107141000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:107136200-107140400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:107136400-107140200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:107137000-107140400	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links