Variant report

Variant	rs10058201
Chromosome Location	chr5:41178869-41178870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10069139	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10070736	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155551	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1035497	0.98[ASN][1000 genomes]
rs10473238	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11749466	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11750411	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13359770	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13435916	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16871019	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2305060	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs403624	0.90[EUR][1000 genomes]
rs4245977	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs436077	0.87[EUR][1000 genomes]
rs4957379	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55638961	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58096029	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6860770	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7443594	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9800055	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
4	chr5:41169600-41181800	Weak transcription	Ovary	ovary
5	chr5:41171800-41181600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41173400-41184000	Weak transcription	Pancreas	Pancrea
7	chr5:41178000-41181400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:41178000-41183800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:41178800-41182000	Strong transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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