Variant report

Variant	rs10059550
Chromosome Location	chr5:119632622-119632623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10478460	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10900739	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11957004	0.88[ASN][1000 genomes]
rs13179456	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1422387	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1422392	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422394	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422395	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4505982	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727196	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs870009	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9327135	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951592	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs992204	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv432803	chr5:119419101-119659101	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv965575	chr5:119621540-119650309	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119629600-119632800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:119629800-119632800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:119630200-119632800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:119630200-119632800	Weak transcription	NHLF	lung
5	chr5:119630400-119632800	Weak transcription	Osteobl	bone
6	chr5:119632400-119633000	Enhancers	NHDF-Ad	bronchial
7	chr5:119632600-119633000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:119632600-119634200	Enhancers	HSMM	muscle
9	chr5:119632600-119634200	Enhancers	HSMMtube	muscle
10	chr5:119632600-119634400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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