Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10059550	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10061606	0.81[ASN][1000 genomes]
rs10478460	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11957004	0.86[ASN][1000 genomes]
rs12653659	0.81[ASN][1000 genomes]
rs12719274	0.81[ASN][1000 genomes]
rs13179456	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1368188	0.81[ASN][1000 genomes]
rs1422387	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1422392	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1422394	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1422395	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897460	0.81[ASN][1000 genomes]
rs4505982	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895151	0.80[ASN][1000 genomes]
rs4895152	0.80[ASN][1000 genomes]
rs6882914	0.80[ASN][1000 genomes]
rs6883232	0.80[ASN][1000 genomes]
rs7706846	0.81[ASN][1000 genomes]
rs7727196	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs870009	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9327135	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951592	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs992204	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv432803	chr5:119419101-119659101	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv965575	chr5:119621540-119650309	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10900739	ATP1B1	trans	lymphoblastoid	seeQTL
rs10900739	LIN7A	trans	lymphoblastoid	seeQTL
rs10900739	KIFAP3	trans	lymphoblastoid	seeQTL
rs10900739	MGST3	trans	lymphoblastoid	seeQTL
rs10900739	HEY1	trans	lymphoblastoid	seeQTL
rs10900739	ACTN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119633600-119639800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:119634400-119639800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:119634600-119640000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:119635000-119639800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:119635000-119639800	Weak transcription	NHDF-Ad	bronchial
6	chr5:119635000-119640400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:119635400-119640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:119635600-119640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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