Variant report

Variant	rs10059609
Chromosome Location	chr5:146706260-146706261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10039739	0.92[ASN][1000 genomes]
rs10040325	0.92[ASN][1000 genomes]
rs10041697	0.93[ASN][1000 genomes]
rs10041912	0.85[ASN][1000 genomes]
rs10064995	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10065264	0.80[ASN][1000 genomes]
rs10070932	0.96[ASN][1000 genomes]
rs10079191	0.93[ASN][1000 genomes]
rs10079272	0.85[ASN][1000 genomes]
rs10477336	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10515580	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11741401	0.99[EUR][1000 genomes]
rs11742132	0.99[EUR][1000 genomes]
rs11747533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748615	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11951154	0.85[ASN][1000 genomes]
rs11954789	0.96[ASN][1000 genomes]
rs11955235	0.84[ASN][1000 genomes]
rs12054990	0.95[EUR][1000 genomes]
rs12055338	0.95[EUR][1000 genomes]
rs12332485	0.85[ASN][1000 genomes]
rs12514269	0.92[ASN][1000 genomes]
rs12659468	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13170279	0.93[ASN][1000 genomes]
rs1424293	0.89[ASN][1000 genomes]
rs17106458	0.96[ASN][1000 genomes]
rs17106505	0.96[ASN][1000 genomes]
rs1834122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895565	0.96[ASN][1000 genomes]
rs2400294	0.93[ASN][1000 genomes]
rs2400295	0.95[ASN][1000 genomes]
rs4705038	0.92[ASN][1000 genomes]
rs4705163	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4705164	0.92[ASN][1000 genomes]
rs4705165	0.95[ASN][1000 genomes]
rs4705166	0.95[ASN][1000 genomes]
rs57921061	0.92[ASN][1000 genomes]
rs6866098	0.85[ASN][1000 genomes]
rs6867255	1.00[ASN][1000 genomes]
rs6872292	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6884181	0.95[ASN][1000 genomes]
rs6891535	0.91[AFR][1000 genomes]
rs72831382	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7707452	1.00[ASN][1000 genomes]
rs7710326	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs918797	0.93[ASN][1000 genomes]
rs918798	0.95[ASN][1000 genomes]
rs9885145	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146688800-146707200	Weak transcription	Pancreas	Pancrea
2	chr5:146703200-146711800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:146703600-146716400	Weak transcription	Ovary	ovary
4	chr5:146703800-146707200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:146703800-146711400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:146705800-146706400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:146706000-146709000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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