Variant report
Variant | rs10065264 |
---|---|
Chromosome Location | chr5:146735344-146735345 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10039739 | 0.82[ASN][1000 genomes] |
rs10040325 | 0.82[ASN][1000 genomes] |
rs10041697 | 0.81[ASN][1000 genomes] |
rs10041912 | 0.90[ASN][1000 genomes] |
rs10059609 | 0.80[ASN][1000 genomes] |
rs10070932 | 0.84[ASN][1000 genomes] |
rs10079191 | 0.81[ASN][1000 genomes] |
rs10079272 | 0.90[ASN][1000 genomes] |
rs10477336 | 0.84[ASN][1000 genomes] |
rs10515580 | 0.83[ASN][1000 genomes] |
rs11747533 | 0.80[ASN][1000 genomes] |
rs11748615 | 0.84[ASN][1000 genomes] |
rs11951154 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs11954789 | 0.84[ASN][1000 genomes] |
rs11955235 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs12332485 | 0.90[ASN][1000 genomes] |
rs12514269 | 0.80[ASN][1000 genomes] |
rs12659468 | 0.84[ASN][1000 genomes] |
rs13170279 | 0.81[ASN][1000 genomes] |
rs17106458 | 0.84[ASN][1000 genomes] |
rs17106505 | 0.84[ASN][1000 genomes] |
rs1834122 | 0.80[ASN][1000 genomes] |
rs1895565 | 0.84[ASN][1000 genomes] |
rs2400294 | 0.81[ASN][1000 genomes] |
rs2400295 | 0.83[ASN][1000 genomes] |
rs4705038 | 0.82[ASN][1000 genomes] |
rs4705163 | 0.84[ASN][1000 genomes] |
rs4705164 | 0.82[ASN][1000 genomes] |
rs4705165 | 0.85[ASN][1000 genomes] |
rs4705166 | 0.85[ASN][1000 genomes] |
rs57921061 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs6866098 | 0.90[ASN][1000 genomes] |
rs6867255 | 0.80[ASN][1000 genomes] |
rs6872292 | 0.84[ASN][1000 genomes] |
rs6884181 | 0.83[ASN][1000 genomes] |
rs72831382 | 0.84[ASN][1000 genomes] |
rs7707452 | 0.80[ASN][1000 genomes] |
rs918797 | 0.81[ASN][1000 genomes] |
rs918798 | 0.83[ASN][1000 genomes] |
rs9885145 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1015804 | chr5:146066000-146788233 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv537915 | chr5:146066000-146788233 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | nsv519847 | chr5:146166378-146812647 | Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv599938 | chr5:146169511-146806365 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
5 | nsv869238 | chr5:146179403-146787986 | Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
6 | nsv311033 | chr5:146735344-146735345 | Strong transcription Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:146727600-146743000 | Weak transcription | Aorta | Aorta |
2 | chr5:146729200-146743000 | Weak transcription | Brain Substantia Nigra | brain |
3 | chr5:146730400-146737000 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr5:146732800-146740200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
5 | chr5:146733800-146750800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |