Variant report

Variant	rs10059760
Chromosome Location	chr5:90440102-90440103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10071548	1.00[ASN][1000 genomes]
rs11744148	1.00[ASN][1000 genomes]
rs57218688	1.00[ASN][1000 genomes]
rs6875416	1.00[ASN][1000 genomes]
rs73185169	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90422800-90440600	Weak transcription	Fetal Kidney	kidney
2	chr5:90423600-90440400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:90424600-90440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:90425400-90440200	Weak transcription	Brain Germinal Matrix	brain
5	chr5:90432000-90444000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:90432400-90444200	Weak transcription	A549	lung
7	chr5:90435600-90443800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:90436200-90440600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:90436200-90440800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:90436200-90440800	Weak transcription	NHLF	lung
11	chr5:90436800-90440600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:90437600-90440600	Enhancers	Adipose Nuclei	Adipose
13	chr5:90437800-90440200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:90437800-90440400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:90437800-90440400	Weak transcription	Fetal Lung	lung
16	chr5:90437800-90442200	Weak transcription	Left Ventricle	heart
17	chr5:90438000-90440400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:90438000-90440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:90438000-90440600	Weak transcription	Right Atrium	heart
20	chr5:90438000-90440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:90438000-90440800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:90438000-90446000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:90438000-90447800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:90438200-90446000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:90438400-90440800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:90438600-90440400	Enhancers	Fetal Muscle Trunk	muscle
27	chr5:90438600-90440400	Enhancers	Gastric	stomach
28	chr5:90438800-90440200	Enhancers	Aorta	Aorta
29	chr5:90438800-90440200	Enhancers	Lung	lung
30	chr5:90438800-90440600	Weak transcription	HUVEC	blood vessel
31	chr5:90438800-90440800	Enhancers	Fetal Muscle Leg	muscle
32	chr5:90439000-90442000	Weak transcription	Colonic Mucosa	Colon
33	chr5:90439000-90444200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:90439200-90442600	Enhancers	Brain Hippocampus Middle	brain
35	chr5:90439400-90441400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:90439400-90443000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:90439600-90440400	Enhancers	Colon Smooth Muscle	Colon
38	chr5:90439600-90440600	Enhancers	Stomach Smooth Muscle	stomach
39	chr5:90439600-90441000	Enhancers	Fetal Stomach	stomach
40	chr5:90439800-90441000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr5:90440000-90440200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:90440000-90440200	Enhancers	Pancreas	Pancrea
43	chr5:90440000-90440400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:90440000-90440400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:90440000-90440400	Weak transcription	NHDF-Ad	bronchial
46	chr5:90440000-90441000	Enhancers	Rectal Smooth Muscle	rectum
47	chr5:90440000-90441200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr5:90440000-90441400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:90440000-90442400	Enhancers	Brain Substantia Nigra	brain
50	chr5:90440000-90442800	Enhancers	Brain Anterior Caudate	brain

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