Variant report

Variant	rs10071548
Chromosome Location	chr5:90308388-90308389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10059760	1.00[ASN][1000 genomes]
rs10942608	1.00[ASN][1000 genomes]
rs11744148	1.00[ASN][1000 genomes]
rs17554631	1.00[ASN][1000 genomes]
rs2443086	1.00[ASN][1000 genomes]
rs57218688	1.00[ASN][1000 genomes]
rs6875416	1.00[ASN][1000 genomes]
rs72784606	1.00[ASN][1000 genomes]
rs73185169	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90292200-90312400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:90294400-90313200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:90306400-90308400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:90306400-90310200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:90308000-90308600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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