Variant report

Variant	rs10060095
Chromosome Location	chr5:152897407-152897408
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13170232	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17114692	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs472792	0.88[JPT][hapmap]
rs548916	0.86[ASN][1000 genomes]
rs67431205	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727515	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1019051	chr5:152550863-153057896	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868912	chr5:152582002-153095306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152885800-152900000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:152885800-152900600	Weak transcription	Aorta	Aorta
3	chr5:152892400-152897600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:152892600-152899800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:152895000-152897600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:152895000-152897600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:152895200-152897600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:152895200-152902200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:152895400-152900200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:152895400-152900600	Weak transcription	NHLF	lung
11	chr5:152895600-152900000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:152895800-152897600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:152895800-152898000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:152896000-152897600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:152896000-152897600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:152896000-152897600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:152896000-152897600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:152896400-152899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:152896400-152899800	Weak transcription	Osteobl	bone
20	chr5:152896600-152897600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:152896600-152899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:152896600-152900400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:152896600-152901000	Weak transcription	HSMMtube	muscle
24	chr5:152896800-152897600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:152896800-152898000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:152896800-152899800	Weak transcription	NHDF-Ad	bronchial
27	chr5:152896800-152902800	Weak transcription	Brain Anterior Caudate	brain
28	chr5:152897000-152897800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:152897000-152899400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:152897000-152899800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:152897000-152900600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:152897000-152902000	Weak transcription	Brain Germinal Matrix	brain
33	chr5:152897200-152899600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:152897200-152900000	Weak transcription	HSMM	muscle
35	chr5:152897400-152897600	Enhancers	Fetal Brain Female	brain
36	chr5:152897400-152899400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:152897400-152899600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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