Variant report

Variant	rs13170232
Chromosome Location	chr5:152899532-152899533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10060095	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17114692	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472792	0.87[JPT][hapmap]
rs548916	0.81[ASN][1000 genomes]
rs67431205	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727515	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1019051	chr5:152550863-153057896	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868912	chr5:152582002-153095306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152885800-152900000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:152885800-152900600	Weak transcription	Aorta	Aorta
3	chr5:152892600-152899800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:152895200-152902200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:152895400-152900200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:152895400-152900600	Weak transcription	NHLF	lung
7	chr5:152895600-152900000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:152896400-152899800	Weak transcription	Osteobl	bone
9	chr5:152896600-152900400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:152896600-152901000	Weak transcription	HSMMtube	muscle
11	chr5:152896800-152899800	Weak transcription	NHDF-Ad	bronchial
12	chr5:152896800-152902800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:152897000-152899800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:152897000-152900600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:152897000-152902000	Weak transcription	Brain Germinal Matrix	brain
16	chr5:152897200-152899600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:152897200-152900000	Weak transcription	HSMM	muscle
18	chr5:152897400-152899600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:152897600-152899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:152897600-152899600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:152897600-152899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:152897600-152900000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:152897600-152900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:152898000-152899600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:152899000-152901200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr5:152899000-152901400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:152899000-152901800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:152899200-152899800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr5:152899200-152906400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:152899400-152899800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:152899400-152900000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:152899400-152901000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr5:152899400-152901400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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