Variant report

Variant	rs10060151
Chromosome Location	chr5:147502144-147502145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10059165	0.96[AFR][1000 genomes]
rs10065596	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659942	0.85[CEU][hapmap]
rs1422987	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17107763	0.85[CEU][hapmap]
rs1862440	0.85[CEU][hapmap]
rs1862441	0.85[CEU][hapmap]
rs1862442	0.85[CEU][hapmap]
rs2287765	0.85[CEU][hapmap]
rs2287767	0.85[CEU][hapmap]
rs2287769	0.85[CEU][hapmap]
rs2287770	0.85[CEU][hapmap]
rs2303064	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303070	0.82[CEU][hapmap]
rs2303074	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2303075	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3764931	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777142	0.85[CEU][hapmap]
rs3815738	0.85[CEU][hapmap]
rs3815739	0.85[CEU][hapmap]
rs3815740	0.85[CEU][hapmap]
rs3815741	0.85[CEU][hapmap]
rs4705054	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883062	0.85[CEU][hapmap]
rs7725816	0.90[ASN][1000 genomes]
rs9325071	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325072	0.96[AFR][1000 genomes]
rs9791022	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:147470600-147508400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:147470600-147509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:147472000-147505000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:147481400-147513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:147481600-147505000	Weak transcription	Esophagus	oesophagus
9	chr5:147482200-147509000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:147486800-147515000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:147487400-147505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:147498800-147513000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:147500200-147506600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:147500200-147513200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:147500400-147506600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:147500400-147516000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:147501200-147502400	Strong transcription	Hela-S3	cervix
19	chr5:147501400-147502400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:147501600-147505600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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