Variant report

Variant	rs9791022
Chromosome Location	chr5:147477184-147477185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147476011..147478506-chr5:147489825..147491357,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10059165	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10060151	0.82[CEU][hapmap]
rs12657423	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12657808	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657979	0.83[ASN][1000 genomes]
rs12659942	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107747	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107754	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107762	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107763	0.87[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1862440	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1862441	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1862442	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1862443	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287765	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287766	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287767	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287769	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287770	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287771	0.80[AMR][1000 genomes]
rs2303070	0.82[ASW][hapmap];0.85[CEU][hapmap];0.84[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34225415	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34975049	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35655863	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777142	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815738	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815739	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815740	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815741	0.86[CEU][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41291433	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55816145	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55862047	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58154955	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58451856	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58670387	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59220312	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59946480	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60283517	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61600033	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883062	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6887442	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72652849	0.85[AMR][1000 genomes]
rs72652850	0.85[AMR][1000 genomes]
rs72660252	0.85[AMR][1000 genomes]
rs72660253	0.90[AMR][1000 genomes]
rs72660254	0.85[AMR][1000 genomes]
rs72660255	0.85[AMR][1000 genomes]
rs72660256	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72660257	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72660258	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72660259	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72660260	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72660261	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73794671	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73794672	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73794676	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9325070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325072	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147464200-147491200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147464400-147488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:147469200-147481400	Weak transcription	Esophagus	oesophagus
4	chr5:147470200-147481200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:147470600-147508400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:147470600-147509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:147472000-147505000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:147472400-147479400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:147472600-147497200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:147474200-147479000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:147474800-147490600	Weak transcription	NHEK	skin
15	chr5:147475200-147480000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:147475400-147477800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:147475600-147477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:147475600-147478200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:147476800-147489800	Strong transcription	Hela-S3	cervix

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