Variant report

Variant	rs10060278
Chromosome Location	chr5:95901403-95901404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95899443..95902123-chr5:95903366..95905587,2	K562	blood:
2	chr5:95900753..95902710-chr5:95911311..95913680,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10055259	1.00[ASN][1000 genomes]
rs10075469	1.00[ASN][1000 genomes]
rs13170241	1.00[ASN][1000 genomes]
rs34503083	1.00[ASN][1000 genomes]
rs34726556	1.00[ASN][1000 genomes]
rs35530229	1.00[ASN][1000 genomes]
rs71630749	1.00[ASN][1000 genomes]
rs868970	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95897800-95902600	Enhancers	HUVEC	blood vessel
2	chr5:95898200-95903200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95898600-95901800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95898800-95901600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:95898800-95901600	Weak transcription	Hela-S3	cervix
6	chr5:95898800-95901800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:95899600-95902600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:95900200-95903400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:95901000-95903400	Enhancers	Osteobl	bone
10	chr5:95901000-95903600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:95901200-95901800	Enhancers	Brain Germinal Matrix	brain
12	chr5:95901200-95902000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:95901200-95902200	Enhancers	NHDF-Ad	bronchial
14	chr5:95901200-95902400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr5:95901200-95902600	Enhancers	NHLF	lung
16	chr5:95901200-95902800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:95901200-95903400	Enhancers	HSMMtube	muscle
18	chr5:95901200-95903600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:95901200-95903600	Enhancers	HSMM	muscle
20	chr5:95901200-95904000	Enhancers	NH-A	brain
21	chr5:95901400-95901800	Enhancers	Brain Angular Gyrus	brain
22	chr5:95901400-95902000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr5:95901400-95902200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:95901400-95902200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:95901400-95902400	Enhancers	A549	lung
26	chr5:95901400-95903000	Enhancers	Brain Hippocampus Middle	brain
27	chr5:95901400-95903200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:95901400-95903200	Enhancers	Brain Anterior Caudate	brain
29	chr5:95901400-95903400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:95901400-95903400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr5:95901400-95903400	Enhancers	HMEC	breast

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