Variant report

Variant	rs10075469
Chromosome Location	chr5:95909680-95909681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10055259	1.00[ASN][1000 genomes]
rs10060278	1.00[ASN][1000 genomes]
rs13170241	1.00[ASN][1000 genomes]
rs34503083	1.00[ASN][1000 genomes]
rs34726556	1.00[ASN][1000 genomes]
rs35530229	1.00[ASN][1000 genomes]
rs71630749	1.00[ASN][1000 genomes]
rs72772065	1.00[AFR][1000 genomes]
rs868970	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2534303	chr5:95908811-95910436	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv6289	chr5:95909465-95910324	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2192082	chr5:95909523-95910280	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469575	chr5:95909603-95910154	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3511418	chr5:95909629-95910168	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3511415	chr5:95909634-95910147	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3469573	chr5:95909644-95910133	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3511421	chr5:95909649-95910096	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3469577	chr5:95909657-95910132	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv4486	chr5:95909668-95910115	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3511420	chr5:95909668-95910122	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3469576	chr5:95909671-95910085	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3511417	chr5:95909679-95910104	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95905400-95918200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:95908000-95910400	Enhancers	Hela-S3	cervix
3	chr5:95908800-95917800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:95909000-95913600	Weak transcription	NHDF-Ad	bronchial
5	chr5:95909400-95913400	Weak transcription	NH-A	brain
6	chr5:95909400-95913600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:95909400-95914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:95909600-95913600	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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