Variant report

Variant	rs1006041
Chromosome Location	chr4:78133557-78133558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78130169..78132632-chr4:78133437..78136630,3	K562	blood:
2	chr4:78132153..78134677-chr4:78134780..78136645,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10006360	0.93[ASN][1000 genomes]
rs10014391	0.90[ASN][1000 genomes]
rs10017796	0.93[ASN][1000 genomes]
rs10017878	0.90[ASN][1000 genomes]
rs10022252	0.93[ASN][1000 genomes]
rs10027894	0.93[ASN][1000 genomes]
rs10028268	0.85[EUR][1000 genomes]
rs10518167	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937096	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11943130	0.97[ASN][1000 genomes]
rs17002416	0.93[ASN][1000 genomes]
rs17002418	0.93[ASN][1000 genomes]
rs28367533	0.93[ASN][1000 genomes]
rs28373623	0.93[ASN][1000 genomes]
rs28416544	0.93[ASN][1000 genomes]
rs28470363	0.93[ASN][1000 genomes]
rs28526402	0.93[ASN][1000 genomes]
rs28693444	0.93[ASN][1000 genomes]
rs28697073	0.93[ASN][1000 genomes]
rs28718050	0.93[ASN][1000 genomes]
rs4150092	0.83[ASN][1000 genomes]
rs4150099	0.83[ASN][1000 genomes]
rs4150103	0.83[ASN][1000 genomes]
rs58288213	0.93[ASN][1000 genomes]
rs58507229	0.84[ASN][1000 genomes]
rs59124751	0.97[ASN][1000 genomes]
rs59757896	0.90[ASN][1000 genomes]
rs6848898	0.93[ASN][1000 genomes]
rs6851055	0.93[ASN][1000 genomes]
rs6852578	0.93[ASN][1000 genomes]
rs72861687	0.93[ASN][1000 genomes]
rs72861692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72861694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863250	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863264	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307246	0.93[ASN][1000 genomes]
rs9654188	0.93[ASN][1000 genomes]
rs9654189	0.93[ASN][1000 genomes]
rs9654190	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000730	chr4:78109138-78210296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1011551	chr4:78120872-78204224	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1012298	chr4:78120872-78255427	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv997743	chr4:78126462-78217004	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1014055	chr4:78132200-78255427	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78125200-78143600	Weak transcription	Primary B cells from cord blood	blood

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