Variant report

Variant	rs10518167
Chromosome Location	chr4:78130221-78130222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77996630..77998488-chr4:78129645..78132473,2	MCF-7	breast:
2	chr4:78130169..78132632-chr4:78133437..78136630,3	K562	blood:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10006360	1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10010725	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10014391	0.90[ASN][1000 genomes]
rs10017796	0.93[ASN][1000 genomes]
rs10017878	0.90[ASN][1000 genomes]
rs10022252	0.93[ASN][1000 genomes]
rs10027894	0.93[ASN][1000 genomes]
rs10028268	1.00[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1006041	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937096	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs11943130	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs17002416	1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17002418	1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17393572	1.00[JPT][hapmap]
rs28367533	0.93[ASN][1000 genomes]
rs28373623	0.93[ASN][1000 genomes]
rs28416544	0.93[ASN][1000 genomes]
rs28470363	0.93[ASN][1000 genomes]
rs28526402	0.93[ASN][1000 genomes]
rs28693444	0.93[ASN][1000 genomes]
rs28697073	0.93[ASN][1000 genomes]
rs28718050	0.93[ASN][1000 genomes]
rs4150060	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4150092	0.83[ASN][1000 genomes]
rs4150099	0.83[ASN][1000 genomes]
rs4150103	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4293811	1.00[JPT][hapmap]
rs58288213	0.93[ASN][1000 genomes]
rs58507229	0.84[ASN][1000 genomes]
rs59124751	0.97[ASN][1000 genomes]
rs59757896	0.90[ASN][1000 genomes]
rs6822800	1.00[JPT][hapmap]
rs6823048	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6848898	1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6851055	0.93[ASN][1000 genomes]
rs6852578	0.93[ASN][1000 genomes]
rs72861687	0.93[ASN][1000 genomes]
rs72861692	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72861694	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863265	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863270	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307246	0.93[ASN][1000 genomes]
rs9654188	0.93[ASN][1000 genomes]
rs9654189	0.93[ASN][1000 genomes]
rs9654190	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000730	chr4:78109138-78210296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1011551	chr4:78120872-78204224	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1012298	chr4:78120872-78255427	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv997743	chr4:78126462-78217004	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10518167	PRKCZ	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78125200-78143600	Weak transcription	Primary B cells from cord blood	blood
2	chr4:78126200-78130600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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