Variant report

Variant	rs4293811
Chromosome Location	chr4:78066162-78066163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77992562..77994708-chr4:78066148..78068888,2	MCF-7	breast:
2	chr4:77994701..77998612-chr4:78066098..78069979,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10006360	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10010725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10014391	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10017796	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10017878	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10022252	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10027894	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10518167	1.00[JPT][hapmap]
rs11943130	1.00[JPT][hapmap]
rs17002416	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17002418	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306410	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28367533	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28373623	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28416544	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28470363	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28526402	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28693444	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28697073	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28718050	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4150060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4150092	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4150099	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4150103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58288213	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58507229	0.84[EUR][1000 genomes]
rs58529735	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59757896	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60714814	1.00[ASN][1000 genomes]
rs6822800	1.00[JPT][hapmap]
rs6823048	1.00[JPT][hapmap]
rs6848898	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6851055	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6852578	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72861687	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9307246	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654188	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654189	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654190	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9995778	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78059000-78067200	Weak transcription	Small Intestine	intestine
2	chr4:78059200-78067200	Weak transcription	Fetal Lung	lung
3	chr4:78064000-78067600	Weak transcription	HSMMtube	muscle
4	chr4:78064200-78066200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:78064200-78067000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:78064600-78066400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:78064600-78066400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:78064600-78066600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:78064600-78067000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:78064800-78066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:78064800-78067000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:78065600-78069200	Enhancers	Fetal Intestine Large	intestine
13	chr4:78065800-78066800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:78065800-78068200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr4:78065800-78069400	Enhancers	Fetal Intestine Small	intestine
16	chr4:78066000-78067400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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