Variant report

Variant	rs10060665
Chromosome Location	chr5:124389248-124389249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11950485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167636	0.82[EUR][1000 genomes]
rs13169162	0.91[EUR][1000 genomes]
rs13171701	0.82[EUR][1000 genomes]
rs35248489	0.82[EUR][1000 genomes]
rs35728314	0.82[EUR][1000 genomes]
rs36109016	0.82[EUR][1000 genomes]
rs4836143	0.81[AMR][1000 genomes]
rs60700802	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6867459	0.89[EUR][1000 genomes]
rs6883243	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71576804	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71594396	0.82[EUR][1000 genomes]
rs9686495	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:124383000-124389400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124387000-124389800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:124387200-124392200	Weak transcription	Brain Anterior Caudate	brain
6	chr5:124387200-124392400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:124387200-124392400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:124387200-124392400	Weak transcription	Brain Substantia Nigra	brain
9	chr5:124387400-124392400	Weak transcription	Aorta	Aorta
10	chr5:124388200-124390600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:124388400-124390000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:124388400-124390200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:124388400-124396400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:124388400-124396400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:124388600-124390000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:124388600-124392400	Weak transcription	Left Ventricle	heart
17	chr5:124388600-124395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:124388800-124390400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr5:124389000-124389400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:124389200-124389600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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