Variant report

Variant	rs11950485
Chromosome Location	chr5:124386991-124386992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10060665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156954	0.84[EUR][1000 genomes]
rs13166517	0.81[EUR][1000 genomes]
rs13169162	0.98[EUR][1000 genomes]
rs34285348	0.81[EUR][1000 genomes]
rs34881137	0.81[EUR][1000 genomes]
rs35996109	0.84[EUR][1000 genomes]
rs36056892	0.81[EUR][1000 genomes]
rs4342331	0.81[EUR][1000 genomes]
rs4836143	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57154044	0.84[EUR][1000 genomes]
rs60700802	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867459	0.91[EUR][1000 genomes]
rs6883243	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71576804	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709555	0.81[EUR][1000 genomes]
rs9686495	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124379000-124388200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:124380600-124388400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:124381800-124388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:124382800-124388400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:124383000-124389400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:124384200-124387000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:124385200-124387200	Enhancers	Brain Anterior Caudate	brain
10	chr5:124386000-124387000	Enhancers	Brain Angular Gyrus	brain
11	chr5:124386800-124387200	Enhancers	Brain Cingulate Gyrus	brain
12	chr5:124386800-124387200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:124386800-124387200	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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