Variant report

Variant	rs7709555
Chromosome Location	chr5:124401791-124401792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11950485	0.81[EUR][1000 genomes]
rs60700802	0.81[EUR][1000 genomes]
rs6867459	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6883243	0.81[EUR][1000 genomes]
rs71576804	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019740	chr5:124394818-124431220	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124395800-124402400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124396400-124405000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:124399200-124401800	Enhancers	Brain Germinal Matrix	brain
4	chr5:124399800-124401800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:124400000-124402200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:124400200-124401800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:124400200-124401800	Enhancers	Fetal Brain Male	brain
8	chr5:124400200-124402200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:124400200-124402200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:124400200-124402200	Enhancers	Fetal Lung	lung
11	chr5:124400400-124401800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:124400400-124401800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:124400400-124402200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:124400400-124402200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:124400400-124402400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:124400400-124402400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:124400600-124401800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:124400600-124401800	Enhancers	Fetal Muscle Leg	muscle
19	chr5:124400600-124402200	Enhancers	Fetal Stomach	stomach
20	chr5:124400800-124401800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:124400800-124402200	Enhancers	Fetal Kidney	kidney
22	chr5:124400800-124402400	Enhancers	Dnd41	blood
23	chr5:124401000-124401800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:124401000-124424200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:124401400-124401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:124401400-124401800	Enhancers	Fetal Brain Female	brain
27	chr5:124401600-124401800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:124401600-124402000	Enhancers	Colon Smooth Muscle	Colon

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