Variant report

Variant	rs10061011
Chromosome Location	chr5:36443160-36443161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36438693..36440826-chr5:36441335..36444284,3	K562	blood:
2	chr5:36416985..36419149-chr5:36442977..36445580,2	K562	blood:
3	chr5:36415500..36419149-chr5:36442914..36446558,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2455277	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2455279	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2468498	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2468502	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2468503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2468504	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2468509	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2468536	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517278	chr5:36430755-36445802	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597816	chr5:36431978-36443160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36439200-36446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:36439800-36446400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:36440000-36444600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:36440200-36444200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:36440200-36444200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:36440600-36445600	Enhancers	Stomach Mucosa	stomach
7	chr5:36440600-36445800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:36441200-36444200	Weak transcription	Fetal Kidney	kidney
9	chr5:36441600-36443600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:36441600-36446600	Enhancers	Placenta	Placenta
11	chr5:36441800-36443200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:36441800-36445400	Enhancers	HMEC	breast
13	chr5:36441800-36445600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:36441800-36446000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:36442000-36443200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:36442000-36443200	Enhancers	HepG2	liver
17	chr5:36442000-36443400	Enhancers	Fetal Intestine Large	intestine
18	chr5:36442200-36443200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:36442200-36443200	Enhancers	GM12878-XiMat	blood
20	chr5:36442200-36444200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:36442200-36444600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:36442200-36444800	Weak transcription	Fetal Brain Female	brain
23	chr5:36442400-36443200	Flanking Active TSS	K562	blood
24	chr5:36442400-36444200	Weak transcription	Brain Substantia Nigra	brain
25	chr5:36442400-36445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:36442400-36445400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:36442600-36443200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:36442600-36443200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr5:36442600-36443200	Enhancers	Thymus	Thymus
30	chr5:36442600-36443200	Flanking Active TSS	Hela-S3	cervix
31	chr5:36442600-36443400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:36442600-36443800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:36442600-36445400	Enhancers	NH-A	brain
34	chr5:36442600-36445600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:36442800-36443200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:36442800-36443800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:36442800-36443800	Weak transcription	Esophagus	oesophagus
38	chr5:36442800-36443800	Weak transcription	Fetal Thymus	thymus
39	chr5:36442800-36443800	Weak transcription	Pancreas	Pancrea
40	chr5:36442800-36444200	Weak transcription	Gastric	stomach
41	chr5:36442800-36444400	Enhancers	Osteobl	bone
42	chr5:36442800-36445200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:36442800-36445200	Enhancers	NHDF-Ad	bronchial
44	chr5:36443000-36443200	Enhancers	NHLF	lung
45	chr5:36443000-36443400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:36443000-36443400	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:36443000-36443800	Weak transcription	Brain Anterior Caudate	brain
48	chr5:36443000-36443800	Enhancers	Fetal Muscle Leg	muscle
49	chr5:36443000-36444400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links