Variant report

Variant	rs1006125
Chromosome Location	chr9:100548619-100548620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1007506	0.90[CHB][hapmap]
rs10984195	0.86[CHB][hapmap]
rs16924202	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59309067	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73655178	1.00[AFR][1000 genomes]
rs73655180	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73655181	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1006125	Hs.43687	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100544400-100553800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:100548400-100548800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:100548400-100549200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:100548600-100548800	Enhancers	A549	lung
5	chr9:100548600-100549000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:100548600-100549000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:100548600-100549000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:100548600-100549000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:100548600-100549000	Enhancers	NHEK	skin
10	chr9:100548600-100549200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:100548600-100549200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:100548600-100549200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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