Variant report

Variant	rs16924202
Chromosome Location	chr9:100549611-100549612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1006125	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1007506	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs10984195	0.86[CHB][hapmap]
rs10984222	0.89[CHD][hapmap];1.00[GIH][hapmap]
rs59309067	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73655180	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100544400-100553800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:100548800-100551200	Weak transcription	A549	lung
3	chr9:100549000-100549800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:100549000-100549800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:100549000-100551400	Weak transcription	NHEK	skin
6	chr9:100549200-100551200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:100549200-100551200	Weak transcription	Hela-S3	cervix
8	chr9:100549200-100551400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:100549200-100551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:100549600-100551800	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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