Variant report

Variant	rs10061870
Chromosome Location	chr5:112835488-112835489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10035218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050553	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063375	1.00[AMR][1000 genomes]
rs10074801	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478125	1.00[AMR][1000 genomes]
rs11949529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956733	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57601831	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60227307	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60343773	1.00[AMR][1000 genomes]
rs9326896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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