Variant report

Variant	rs10074801
Chromosome Location	chr5:112820839-112820840
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10035218	1.00[AMR][1000 genomes]
rs10035858	1.00[AMR][1000 genomes]
rs10050553	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061870	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063375	1.00[AMR][1000 genomes]
rs10074847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478125	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949529	1.00[AMR][1000 genomes]
rs11956733	1.00[AMR][1000 genomes]
rs57601831	1.00[AMR][1000 genomes]
rs60227307	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60343773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326896	1.00[AMR][1000 genomes]
rs9885504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112807800-112821600	Weak transcription	HMEC	breast
2	chr5:112810200-112823000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:112810400-112821600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112813400-112822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:112820600-112821000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:112820600-112823000	Weak transcription	Right Ventricle	heart
7	chr5:112820800-112821000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:112820800-112821000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:112820800-112821000	Bivalent Enhancer	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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