Variant report

Variant	rs10061877
Chromosome Location	chr5:178375053-178375054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11739705	0.80[EUR][1000 genomes]
rs12521384	0.84[EUR][1000 genomes]
rs12719860	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62395109	0.89[EUR][1000 genomes]
rs6867221	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs961030	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178368800-178377000	Weak transcription	Psoas Muscle	Psoas
2	chr5:178369000-178378400	Weak transcription	NHDF-Ad	bronchial
3	chr5:178369000-178378800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:178369000-178380200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
6	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
7	chr5:178369600-178377400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr5:178370000-178376200	Weak transcription	Placenta	Placenta
9	chr5:178370000-178378400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:178371000-178376000	Strong transcription	Fetal Muscle Leg	muscle
11	chr5:178371000-178376000	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr5:178371200-178375800	ZNF genes & repeats	Aorta	Aorta
13	chr5:178371200-178379200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr5:178371400-178375800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:178371600-178375600	ZNF genes & repeats	Esophagus	oesophagus
16	chr5:178371800-178378000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr5:178372200-178375600	Strong transcription	Right Ventricle	heart
18	chr5:178372400-178375800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:178372400-178375800	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr5:178372400-178376400	ZNF genes & repeats	Pancreas	Pancrea
21	chr5:178372600-178375600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:178372600-178377400	Weak transcription	Fetal Heart	heart
23	chr5:178372800-178375600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:178372800-178375600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:178373000-178375600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:178373000-178375600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr5:178373200-178375800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:178373200-178375800	ZNF genes & repeats	Ovary	ovary
29	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:178373400-178376200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:178373600-178375800	Strong transcription	Rectal Smooth Muscle	rectum
32	chr5:178373600-178377200	Strong transcription	Brain Germinal Matrix	brain
33	chr5:178374000-178375400	Strong transcription	Osteobl	bone
34	chr5:178374000-178375800	Strong transcription	Fetal Kidney	kidney
35	chr5:178374200-178375600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr5:178374200-178375600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
37	chr5:178374200-178375600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
38	chr5:178374200-178375800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:178374200-178375800	ZNF genes & repeats	Left Ventricle	heart
40	chr5:178374400-178376000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:178374400-178376000	Weak transcription	Fetal Intestine Large	intestine
42	chr5:178374600-178375400	Weak transcription	Brain Anterior Caudate	brain
43	chr5:178374600-178375800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr5:178374600-178376600	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:178374600-178376800	Weak transcription	Brain Substantia Nigra	brain
46	chr5:178374600-178380400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr5:178374800-178375400	Weak transcription	Fetal Brain Male	brain
48	chr5:178374800-178375600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:178374800-178376800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:178374800-178377000	Weak transcription	Brain Hippocampus Middle	brain

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