Variant report

Variant	rs62395109
Chromosome Location	chr5:178386808-178386809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10061877	0.89[EUR][1000 genomes]
rs11739705	0.87[EUR][1000 genomes]
rs11740252	0.83[EUR][1000 genomes]
rs11740277	0.83[EUR][1000 genomes]
rs12521384	0.89[EUR][1000 genomes]
rs12719860	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2856348	0.81[EUR][1000 genomes]
rs55649196	0.83[EUR][1000 genomes]
rs56319808	0.81[EUR][1000 genomes]
rs59955497	0.85[EUR][1000 genomes]
rs6867221	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7728828	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv525129	chr5:178385585-178390237	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3471133	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3471134	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
3	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr5:178382400-178389400	Weak transcription	HSMM	muscle
6	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
8	chr5:178383400-178394400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:178384200-178388000	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chr5:178384400-178395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:178384600-178387200	ZNF genes & repeats	Fetal Lung	lung
12	chr5:178384600-178387600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr5:178384600-178388000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr5:178384800-178388600	Weak transcription	Gastric	stomach
15	chr5:178385200-178387600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr5:178385200-178388000	ZNF genes & repeats	Liver	Liver
17	chr5:178385400-178387400	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr5:178385600-178388600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:178386200-178387600	ZNF genes & repeats	Aorta	Aorta
20	chr5:178386200-178388200	ZNF genes & repeats	Left Ventricle	heart
21	chr5:178386400-178387000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:178386400-178388600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:178386400-178388600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
24	chr5:178386400-178388800	Weak transcription	Fetal Kidney	kidney
25	chr5:178386400-178389600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr5:178386400-178389800	Weak transcription	Right Ventricle	heart
27	chr5:178386600-178387600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
28	chr5:178386600-178388800	ZNF genes & repeats	Fetal Stomach	stomach
29	chr5:178386600-178389000	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:178386800-178388800	Weak transcription	Brain Angular Gyrus	brain

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