Variant report

Variant	rs10061961
Chromosome Location	chr5:41907809-41907810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:41867500..41871930-chr5:41901815..41908844,17	K562	blood:
2	chr5:41903420..41907025-chr5:41907482..41911451,8	MCF-7	breast:
3	chr5:41865404..41878163-chr5:41900217..41908471,28	K562	blood:
4	chr5:41905678..41908829-chr5:41924042..41927034,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205765	Chromatin interaction
ENSG00000151876	Chromatin interaction
ENSG00000083720	Chromatin interaction
ENSG00000248668	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10037152	0.96[AFR][1000 genomes]
rs10039091	0.83[AFR][1000 genomes]
rs10051536	1.00[AFR][1000 genomes]
rs10054482	0.87[AFR][1000 genomes]
rs10071732	0.96[AFR][1000 genomes]
rs10072903	0.83[AFR][1000 genomes]
rs10079775	0.87[AFR][1000 genomes]
rs10080034	0.87[AFR][1000 genomes]
rs10473254	0.87[AFR][1000 genomes]
rs13354429	0.83[AFR][1000 genomes]
rs13358155	0.83[AFR][1000 genomes]
rs16872021	1.00[AFR][1000 genomes]
rs9292830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762518	chr5:41780210-41935113	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	108 gene(s)	inside rSNPs	diseases
2	nsv830272	chr5:41833365-41986167	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
3	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
4	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
5	nsv327668	chr5:41901383-41909830	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41905000-41924800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:41905200-41908600	Weak transcription	Ovary	ovary
3	chr5:41905200-41912600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:41905200-41912600	Weak transcription	Fetal Stomach	stomach
5	chr5:41905200-41915400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:41905200-41918200	Weak transcription	Aorta	Aorta
7	chr5:41905200-41925000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:41905400-41910200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:41905600-41908000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:41905600-41908200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:41905600-41908400	Weak transcription	Colonic Mucosa	Colon
12	chr5:41905600-41908600	Weak transcription	Fetal Brain Female	brain
13	chr5:41905600-41908600	Weak transcription	Fetal Kidney	kidney
14	chr5:41905600-41910000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:41905600-41910200	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:41905600-41911200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:41905600-41912600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:41905600-41912600	Weak transcription	Lung	lung
19	chr5:41905600-41912600	Weak transcription	Thymus	Thymus
20	chr5:41905600-41912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:41905600-41921000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:41905600-41924600	Weak transcription	Small Intestine	intestine
23	chr5:41905800-41908000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:41905800-41908000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:41905800-41908000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:41905800-41908000	Weak transcription	Adipose Nuclei	Adipose
27	chr5:41905800-41908000	Weak transcription	Placenta	Placenta
28	chr5:41905800-41908000	Weak transcription	HSMM	muscle
29	chr5:41905800-41908200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:41905800-41908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:41905800-41908400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:41905800-41908400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr5:41905800-41908400	Weak transcription	HMEC	breast
34	chr5:41905800-41908600	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:41905800-41908600	Weak transcription	NHLF	lung
36	chr5:41905800-41910200	Weak transcription	Esophagus	oesophagus
37	chr5:41905800-41910200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:41905800-41911400	Weak transcription	Brain Germinal Matrix	brain
39	chr5:41905800-41911400	Weak transcription	Fetal Brain Male	brain
40	chr5:41905800-41912200	Weak transcription	NHEK	skin
41	chr5:41905800-41912600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:41905800-41912600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:41905800-41912600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:41905800-41912600	Weak transcription	Pancreas	Pancrea
45	chr5:41905800-41912800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr5:41905800-41918200	Weak transcription	Psoas Muscle	Psoas
47	chr5:41905800-41918200	Weak transcription	Spleen	Spleen
48	chr5:41905800-41922200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr5:41905800-41923800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:41905800-41924400	Weak transcription	Stomach Mucosa	stomach

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