Variant report

Variant	rs10079775
Chromosome Location	chr5:41889386-41889387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:41877897..41883547-chr5:41886069..41890189,5	K562	blood:
2	chr5:41889147..41892040-chr5:41892330..41895312,4	K562	blood:
3	chr5:41883917..41886978-chr5:41887352..41891327,3	K562	blood:
4	chr5:41888696..41891636-chr5:41903248..41905861,3	MCF-7	breast:
5	chr5:41882384..41891851-chr5:41900562..41907560,15	K562	blood:
6	chr5:41887319..41889409-chr5:41922980..41925910,2	K562	blood:

Variant related genes	Relation type
ENSG00000151876	Chromatin interaction
ENSG00000205765	Chromatin interaction
ENSG00000240281	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10037152	0.83[AFR][1000 genomes]
rs10038717	0.91[AFR][1000 genomes]
rs10039091	0.95[AFR][1000 genomes]
rs10042050	0.87[AFR][1000 genomes]
rs10045224	0.91[AFR][1000 genomes]
rs10051536	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10061961	0.87[AFR][1000 genomes]
rs10064781	0.86[AFR][1000 genomes]
rs10071732	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10072903	0.95[AFR][1000 genomes]
rs10080034	1.00[AFR][1000 genomes]
rs10214013	0.91[AFR][1000 genomes]
rs10473254	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13354429	0.95[AFR][1000 genomes]
rs13357640	0.91[AFR][1000 genomes]
rs13358155	0.95[AFR][1000 genomes]
rs16872021	0.87[AFR][1000 genomes]
rs28429157	0.87[AFR][1000 genomes]
rs28588578	0.91[AFR][1000 genomes]
rs28661292	0.87[AFR][1000 genomes]
rs9292830	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2762518	chr5:41780210-41935113	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830272	chr5:41833365-41986167	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
4	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
5	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41888600-41889800	Weak transcription	K562	blood

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