Variant report

Variant	rs28588578
Chromosome Location	chr5:41757626-41757627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41755998..41758504-chr5:41761054..41764020,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10037152	0.83[AFR][1000 genomes]
rs10038717	1.00[AFR][1000 genomes]
rs10039091	0.95[AFR][1000 genomes]
rs10042050	0.87[AFR][1000 genomes]
rs10045224	0.91[AFR][1000 genomes]
rs10064781	0.86[AFR][1000 genomes]
rs10072903	0.95[AFR][1000 genomes]
rs10079775	0.91[AFR][1000 genomes]
rs10080034	0.91[AFR][1000 genomes]
rs10214013	1.00[AFR][1000 genomes]
rs10473254	0.91[AFR][1000 genomes]
rs13354429	0.95[AFR][1000 genomes]
rs13357640	1.00[AFR][1000 genomes]
rs13358155	0.95[AFR][1000 genomes]
rs28429157	0.87[AFR][1000 genomes]
rs28661292	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41727800-41758200	Weak transcription	Esophagus	oesophagus
2	chr5:41728600-41763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:41730200-41764000	Weak transcription	Spleen	Spleen
4	chr5:41730600-41760800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:41731400-41800400	Weak transcription	Small Intestine	intestine
6	chr5:41734600-41757800	Weak transcription	Fetal Intestine Small	intestine
7	chr5:41735600-41763200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:41735600-41763400	Weak transcription	Fetal Brain Male	brain
9	chr5:41735800-41800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:41736200-41763400	Weak transcription	Psoas Muscle	Psoas
11	chr5:41736800-41763000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:41737800-41763400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:41738800-41759600	Weak transcription	Ovary	ovary
14	chr5:41738800-41760800	Weak transcription	NHEK	skin
15	chr5:41739200-41763200	Weak transcription	Brain Substantia Nigra	brain
16	chr5:41739400-41759000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:41739400-41770800	Weak transcription	Pancreas	Pancrea
18	chr5:41739400-41788800	Weak transcription	Gastric	stomach
19	chr5:41739400-41790200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:41739400-41799600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:41739600-41758200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:41739600-41761200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:41739600-41764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:41739600-41764600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:41739600-41765200	Weak transcription	Lung	lung
26	chr5:41739600-41768000	Weak transcription	Right Ventricle	heart
27	chr5:41739600-41786400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:41739600-41794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:41739800-41770400	Weak transcription	Fetal Stomach	stomach
30	chr5:41747000-41762800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:41747000-41784000	Weak transcription	K562	blood
32	chr5:41747400-41777600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:41747600-41760800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:41747800-41762800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:41747800-41766400	Weak transcription	Brain Angular Gyrus	brain
36	chr5:41748000-41760800	Weak transcription	Fetal Kidney	kidney
37	chr5:41748200-41762000	Weak transcription	Fetal Lung	lung
38	chr5:41748200-41762200	Weak transcription	NHLF	lung
39	chr5:41748200-41762600	Weak transcription	NH-A	brain
40	chr5:41748200-41776000	Weak transcription	HUVEC	blood vessel
41	chr5:41748400-41759000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:41748400-41761200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:41748400-41762800	Weak transcription	Fetal Heart	heart
44	chr5:41748800-41759400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:41748800-41763600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr5:41748800-41768000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:41749000-41758600	Weak transcription	Fetal Intestine Large	intestine
48	chr5:41749200-41760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:41749200-41760800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr5:41749200-41761000	Weak transcription	Osteobl	bone

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