Variant report

Variant	rs28429157
Chromosome Location	chr5:41738050-41738051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10038717	0.87[AFR][1000 genomes]
rs10039091	0.92[AFR][1000 genomes]
rs10042050	0.83[AFR][1000 genomes]
rs10045224	0.96[AFR][1000 genomes]
rs10072903	0.92[AFR][1000 genomes]
rs10079775	0.87[AFR][1000 genomes]
rs10080034	0.87[AFR][1000 genomes]
rs10214013	0.87[AFR][1000 genomes]
rs10473254	0.87[AFR][1000 genomes]
rs13354429	0.92[AFR][1000 genomes]
rs13357640	0.87[AFR][1000 genomes]
rs13358155	0.92[AFR][1000 genomes]
rs28588578	0.87[AFR][1000 genomes]
rs28661292	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3326078	chr5:41710992-41743453	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41723000-41739200	Weak transcription	Aorta	Aorta
2	chr5:41725400-41739200	Weak transcription	Right Ventricle	heart
3	chr5:41725600-41747400	Weak transcription	Fetal Kidney	kidney
4	chr5:41727200-41738400	Weak transcription	Thymus	Thymus
5	chr5:41727400-41751400	Weak transcription	Fetal Brain Female	brain
6	chr5:41727600-41738400	Weak transcription	Gastric	stomach
7	chr5:41727600-41738400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:41727800-41738400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:41727800-41747200	Weak transcription	NH-A	brain
10	chr5:41727800-41758200	Weak transcription	Esophagus	oesophagus
11	chr5:41728000-41739200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:41728200-41738400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:41728600-41763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:41728800-41738400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:41728800-41738400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:41729000-41738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:41729200-41738400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:41729200-41738400	Weak transcription	Brain Anterior Caudate	brain
19	chr5:41729200-41738400	Weak transcription	NHEK	skin
20	chr5:41729200-41755000	Weak transcription	NHDF-Ad	bronchial
21	chr5:41729400-41738600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr5:41729800-41739000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:41729800-41739200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr5:41730000-41738600	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:41730200-41764000	Weak transcription	Spleen	Spleen
26	chr5:41730600-41739200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:41730600-41760800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:41730800-41738400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:41730800-41738600	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:41731400-41747200	Weak transcription	Fetal Lung	lung
31	chr5:41731400-41800400	Weak transcription	Small Intestine	intestine
32	chr5:41731800-41738400	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:41732200-41738400	Weak transcription	Ovary	ovary
34	chr5:41732400-41747200	Weak transcription	HUVEC	blood vessel
35	chr5:41732800-41739800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:41733400-41747400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr5:41733800-41741800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:41734000-41738400	Weak transcription	NHLF	lung
39	chr5:41734000-41738600	Weak transcription	K562	blood
40	chr5:41734200-41738400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:41734200-41738400	Weak transcription	Fetal Stomach	stomach
42	chr5:41734600-41738400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:41734600-41738400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:41734600-41738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:41734600-41738400	Weak transcription	Pancreas	Pancrea
46	chr5:41734600-41757800	Weak transcription	Fetal Intestine Small	intestine
47	chr5:41734800-41742200	Strong transcription	Dnd41	blood
48	chr5:41735200-41740600	Strong transcription	Adipose Nuclei	Adipose
49	chr5:41735200-41741800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr5:41735200-41742800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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