Variant report

Variant	rs10045224
Chromosome Location	chr5:41729980-41729981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10038717	0.91[AFR][1000 genomes]
rs10039091	0.96[AFR][1000 genomes]
rs10042050	0.87[AFR][1000 genomes]
rs10072903	0.96[AFR][1000 genomes]
rs10079775	0.91[AFR][1000 genomes]
rs10080034	0.91[AFR][1000 genomes]
rs10214013	0.91[AFR][1000 genomes]
rs10473254	0.91[AFR][1000 genomes]
rs13354429	0.96[AFR][1000 genomes]
rs13357640	0.91[AFR][1000 genomes]
rs13358155	0.96[AFR][1000 genomes]
rs28429157	0.96[AFR][1000 genomes]
rs28588578	0.91[AFR][1000 genomes]
rs28661292	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3326078	chr5:41710992-41743453	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41722000-41736800	Weak transcription	HSMMtube	muscle
2	chr5:41723000-41735800	Weak transcription	GM12878-XiMat	blood
3	chr5:41723000-41739200	Weak transcription	Aorta	Aorta
4	chr5:41725400-41739200	Weak transcription	Right Ventricle	heart
5	chr5:41725600-41747400	Weak transcription	Fetal Kidney	kidney
6	chr5:41726600-41736000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:41726600-41736000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:41727000-41730600	Weak transcription	Left Ventricle	heart
9	chr5:41727200-41730600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:41727200-41735200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:41727200-41735800	Weak transcription	Lung	lung
12	chr5:41727200-41738400	Weak transcription	Thymus	Thymus
13	chr5:41727400-41730400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:41727400-41730400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:41727400-41735400	Weak transcription	Hela-S3	cervix
16	chr5:41727400-41751400	Weak transcription	Fetal Brain Female	brain
17	chr5:41727600-41730400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:41727600-41735400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:41727600-41735400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:41727600-41738400	Weak transcription	Gastric	stomach
21	chr5:41727600-41738400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:41727800-41738400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:41727800-41747200	Weak transcription	NH-A	brain
24	chr5:41727800-41758200	Weak transcription	Esophagus	oesophagus
25	chr5:41728000-41739200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr5:41728200-41738400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr5:41728400-41730600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:41728400-41730600	Weak transcription	Small Intestine	intestine
29	chr5:41728400-41731600	Strong transcription	Primary T cells from cord blood	blood
30	chr5:41728600-41735200	Weak transcription	Adipose Nuclei	Adipose
31	chr5:41728600-41763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:41728800-41730400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr5:41728800-41730400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:41728800-41731000	Strong transcription	Primary B cells from cord blood	blood
35	chr5:41728800-41738400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:41728800-41738400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:41729000-41731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr5:41729000-41736000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:41729000-41738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:41729200-41735200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:41729200-41736800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:41729200-41737000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr5:41729200-41738000	Weak transcription	HMEC	breast
44	chr5:41729200-41738400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:41729200-41738400	Weak transcription	Brain Anterior Caudate	brain
46	chr5:41729200-41738400	Weak transcription	NHEK	skin
47	chr5:41729200-41755000	Weak transcription	NHDF-Ad	bronchial
48	chr5:41729400-41730400	Weak transcription	Dnd41	blood
49	chr5:41729400-41735400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:41729400-41736000	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links