Variant report

Variant	rs10064194
Chromosome Location	chr5:146810610-146810611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:146802902..146805345-chr5:146810324..146812732,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1432842	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4705172	0.81[ASN][1000 genomes]
rs7713047	0.82[CHB][hapmap];0.88[CHD][hapmap];0.84[YRI][hapmap]
rs7725771	0.83[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs7732327	0.84[YRI][hapmap]
rs995976	0.82[CHB][hapmap];0.88[CHD][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146770200-146810800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:146797200-146810800	Weak transcription	Brain Anterior Caudate	brain
3	chr5:146797400-146810800	Weak transcription	Spleen	Spleen
4	chr5:146797800-146811200	Weak transcription	Left Ventricle	heart
5	chr5:146798000-146810800	Weak transcription	Fetal Heart	heart
6	chr5:146798200-146811200	Weak transcription	Fetal Lung	lung
7	chr5:146798200-146815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:146798400-146811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:146798800-146811200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:146803600-146811400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:146804400-146810800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:146804400-146815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:146804600-146810800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:146805000-146810800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:146805800-146819200	Enhancers	Colon Smooth Muscle	Colon
18	chr5:146806000-146812400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr5:146806000-146814800	Enhancers	Fetal Brain Male	brain
20	chr5:146806800-146810800	Weak transcription	Fetal Intestine Large	intestine
21	chr5:146806800-146811400	Enhancers	Rectal Smooth Muscle	rectum
22	chr5:146807600-146811000	Weak transcription	Fetal Stomach	stomach
23	chr5:146807600-146812800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:146808000-146810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:146808000-146811200	Weak transcription	Aorta	Aorta
26	chr5:146808000-146811200	Weak transcription	NH-A	brain
27	chr5:146808000-146816200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:146808200-146810800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:146808200-146810800	Weak transcription	Ovary	ovary
30	chr5:146808200-146811200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:146808200-146816400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:146808200-146816600	Weak transcription	Osteobl	bone
33	chr5:146808200-146818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:146808800-146810800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:146809000-146810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:146809000-146811200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr5:146809000-146811200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:146809000-146811200	Weak transcription	Lung	lung
39	chr5:146809000-146811200	Weak transcription	Psoas Muscle	Psoas
40	chr5:146809000-146811400	Weak transcription	Pancreas	Pancrea
41	chr5:146809000-146816600	Weak transcription	Esophagus	oesophagus
42	chr5:146809400-146810800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr5:146809400-146811200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:146809400-146811400	Weak transcription	Right Atrium	heart
45	chr5:146809400-146819200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:146809600-146810800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:146809800-146810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr5:146809800-146814000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:146810000-146823400	Weak transcription	Small Intestine	intestine
50	chr5:146810200-146810800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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