Variant report

Variant	rs7732327
Chromosome Location	chr5:146824553-146824554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10056132	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10064194	0.84[YRI][hapmap]
rs10079318	0.87[EUR][1000 genomes]
rs1432842	0.82[ASN][1000 genomes]
rs4705171	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs4705172	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713047	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725771	0.82[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7734086	0.85[YRI][hapmap]
rs995976	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:146812200-146825600	Weak transcription	Placenta	Placenta
3	chr5:146813000-146831800	Weak transcription	Right Ventricle	heart
4	chr5:146813200-146828200	Weak transcription	NHLF	lung
5	chr5:146814200-146826400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:146816800-146826200	Weak transcription	Lung	lung
7	chr5:146817200-146824600	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:146817200-146825600	Weak transcription	Right Atrium	heart
9	chr5:146817200-146826200	Weak transcription	Psoas Muscle	Psoas
10	chr5:146817200-146829000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:146817200-146830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:146817200-146831800	Weak transcription	Esophagus	oesophagus
13	chr5:146817400-146824600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:146817400-146824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:146818200-146824600	Weak transcription	Brain Anterior Caudate	brain
16	chr5:146819000-146825200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:146819200-146824600	Weak transcription	Aorta	Aorta
18	chr5:146819200-146825400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:146819200-146825600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:146819200-146825800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:146819200-146826000	Weak transcription	NH-A	brain
22	chr5:146819200-146831600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:146819200-146831600	Weak transcription	Spleen	Spleen
24	chr5:146819400-146824800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:146819400-146825000	Weak transcription	NHDF-Ad	bronchial
26	chr5:146819400-146826200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:146820600-146825600	Weak transcription	Brain Substantia Nigra	brain
28	chr5:146822000-146826000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:146822000-146826200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:146822200-146824600	Weak transcription	Ovary	ovary
31	chr5:146822200-146825600	Weak transcription	Adipose Nuclei	Adipose
32	chr5:146822200-146828800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:146822400-146825800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:146822600-146824600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:146822800-146824800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr5:146822800-146825000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:146823000-146825800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr5:146823200-146826200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr5:146823200-146827000	Enhancers	Rectal Smooth Muscle	rectum
40	chr5:146823200-146831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:146823400-146824600	Genic enhancers	Fetal Brain Female	brain
42	chr5:146823400-146825800	Enhancers	Stomach Smooth Muscle	stomach
43	chr5:146823400-146827000	Enhancers	Colon Smooth Muscle	Colon
44	chr5:146823600-146825000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:146823600-146825800	Weak transcription	Left Ventricle	heart
46	chr5:146823600-146826000	Weak transcription	Small Intestine	intestine
47	chr5:146823600-146826400	Enhancers	Fetal Brain Male	brain
48	chr5:146823600-146827000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:146823600-146827000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
50	chr5:146823600-146828600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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