Variant report

Variant	rs10065073
Chromosome Location	chr5:15560333-15560334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10085170	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10474717	0.81[EUR][1000 genomes]
rs10475067	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12516651	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13185365	0.95[ASN][1000 genomes]
rs4144522	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6861983	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6862606	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6879834	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6889573	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7732619	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9312891	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9312892	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9312896	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
2	chr5:15536400-15561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:15544600-15563400	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:15551000-15561600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:15551200-15566200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:15551400-15566800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:15551600-15561400	Weak transcription	Fetal Lung	lung
8	chr5:15551600-15561600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:15551600-15561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:15555800-15562800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:15555800-15571800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:15555800-15584200	Weak transcription	HSMM	muscle
13	chr5:15558000-15562600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:15558000-15563400	Weak transcription	Right Ventricle	heart
15	chr5:15558200-15563400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:15558800-15562800	Weak transcription	Fetal Heart	heart
17	chr5:15558800-15563600	Weak transcription	Left Ventricle	heart
18	chr5:15558800-15574800	Weak transcription	Fetal Stomach	stomach
19	chr5:15559200-15563800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr5:15559200-15574800	Weak transcription	Aorta	Aorta
21	chr5:15559400-15561400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:15560200-15560800	Enhancers	Fetal Kidney	kidney
23	chr5:15560200-15561400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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