Variant report

Variant	rs10474717
Chromosome Location	chr5:15557970-15557971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15555594..15558583-chr5:15570840..15572694,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10065073	0.81[EUR][1000 genomes]
rs10085170	0.83[CEU][hapmap]
rs10475067	0.84[EUR][1000 genomes]
rs12516651	0.84[EUR][1000 genomes]
rs13185365	0.89[CHB][hapmap]
rs1366651	0.80[JPT][hapmap]
rs4144522	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs6879834	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs6889573	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs7732619	0.87[CEU][hapmap]
rs9312891	0.82[EUR][1000 genomes]
rs9312892	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
2	chr5:15524000-15558600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:15536400-15561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:15541000-15558600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:15544600-15563400	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:15551000-15561600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:15551200-15559400	Weak transcription	Fetal Brain Male	brain
8	chr5:15551200-15566200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:15551400-15558400	Weak transcription	Aorta	Aorta
10	chr5:15551400-15566800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:15551600-15561400	Weak transcription	Fetal Lung	lung
12	chr5:15551600-15561600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:15551600-15561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:15555800-15562800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:15555800-15571800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:15555800-15584200	Weak transcription	HSMM	muscle
17	chr5:15557200-15558800	Enhancers	Fetal Stomach	stomach
18	chr5:15557400-15559400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:15557600-15558000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:15557600-15558000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:15557600-15558000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:15557600-15558000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:15557600-15558000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:15557600-15558000	Enhancers	Brain Cingulate Gyrus	brain
25	chr5:15557600-15558000	Enhancers	Right Ventricle	heart
26	chr5:15557600-15558200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:15557600-15558200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:15557600-15558200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:15557600-15558200	Enhancers	Brain Hippocampus Middle	brain
30	chr5:15557600-15558600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:15557600-15558800	Enhancers	Fetal Heart	heart
32	chr5:15557600-15559000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:15557600-15559000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr5:15557600-15559000	Enhancers	Brain Substantia Nigra	brain
35	chr5:15557600-15559000	Enhancers	Fetal Muscle Leg	muscle
36	chr5:15557800-15558000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr5:15557800-15558000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr5:15557800-15558600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:15557800-15558800	Enhancers	Left Ventricle	heart
40	chr5:15557800-15559000	Enhancers	Brain Anterior Caudate	brain

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